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seqloc

A Haskell library to manage sequence location data.
On Hackage
On GitHub
A Tutorial

seqloc-datafiles

A Haskell library for reading and writing location data to BED and GTF format files
On Hackage
On GitHub
A Tutorial

samtools

A Haskell library for handling SAM/BAM format alignments, a wrapper around the SAMtools C library.
On Hackage
On GitHub
A Tutorial

samtools-iteratee

An Iteratee style interface to SAM alignments.
On Hackage
On GitHub

samtools-enumerator

An Enumerator style interface to SAM alignments.
On Hackage
On GitHub