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Mills EW, Wangen J, Green R, Ingolia NT. Dynamic Regulation of a Ribosome Rescue Pathway in Erythroid Cells and Platelets. Cell reports 17: 1-10 (2016).
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Iwasaki S, Floor SN, Ingolia NT. Rocaglates convert DEAD-box protein eIF4A into a sequence-selective translational repressor. Nature 534 (2016).
Newman ZR, Young JM, Ingolia NT, Barton GM. Differences in codon bias and GC content contribute to the balanced expression of TLR7 and TLR9. Proceedings of the National Academy of Sciences of the United States of America 113: E1362-71 (2016).
Fields AP, Rodriguez EH, Jovanovic M, Stern-Ginossar N, Haas BJ, Mertins P, Raychowdhury R, Hacohen N, Carr SA, Ingolia NT, Regev A, Weissman JS. A Regression-Based Analysis of Ribosome-Profiling Data Reveals a Conserved Complexity to Mammalian Translation. Molecular cell 60: 816-27 (2015).
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Ori A, Toyama BH, Harris MS, Bock T, Iskar M, Bork P, Ingolia NT, Hetzer MW, Beck M. Integrated Transcriptome and Proteome Analyses Reveal Organ-Specific Proteome Deterioration in Old Rats. Cell Systems 1: 224 (2015).
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Sidrauski C, McGeachy AM, Ingolia NT, Walter P. The small molecule ISRIB reverses the effects of eIF2α phosphorylation on translation and stress granule assembly. eLife 4 (2015).
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Yoon JH, De S, Srikantan S, Abdelmohsen K, Grammatikakis I, Kim J, Kim KM, Noh JH, White EJ, Martindale JL, Yang X, Kang MJ, Wood WH 3rd, Noren Hooten N, Evans MK, Becker KG, Tripathi V, Prasanth KV, Wilson GM, Tuschl T, Ingolia NT, Hafner M, Gorospe M. PAR-CLIP analysis uncovers AUF1 impact on target RNA fate and genome integrity. Nature communications 5: 5248 (2014).
Jensen BC, Ramasamy G, Vasconcelos EJ, Ingolia NT, Myler PJ, Parsons M. Extensive stage-regulation of translation revealed by ribosome profiling of Trypanosoma brucei. BMC genomics 15: 911 (2014).
Ingolia NT, Brar GA, Stern-Ginossar N, Harris MS, Talhouarne GJ, Jackson SE, Wills MR, Weissman JS. Ribosome profiling reveals pervasive translation outside of annotated protein-coding genes. Cell reports 8: 1365 (2014).
Castañeda J, Genzor P, van der Heijden GW, Sarkeshik A, Yates JR 3rd, Ingolia NT, Bortvin A. Reduced pachytene piRNAs and translation underlie spermiogenic arrest in Maelstrom mutant mice. The EMBO journal 33: 1999 (2014).
Brubaker SW, Gauthier AE, Mills EW, Ingolia NT, Kagan JC. A bicistronic MAVS transcript highlights a class of truncated variants in antiviral immunity. Cell 156: 800 (2014).
Toyama BH, Savas JN, Park SK, Harris MS, Ingolia NT,
Yates JR 3rd, Hetzer MW. Identification of long-lived
proteins reveals exceptional stability of essential
cellular structures. Cell 154: 971 (2013).
Guttman M, Russell P, Ingolia NT, Weissman JS, Lander
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noncoding RNAs do not encode
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through START. Mol Biol Cell 24: 1274
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Nakatsu F, Baskin JM, Chung J, Tanner LB, Shui G, Lee SY,
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Michel AM, Roy Choudhury K, Firth AE, Ingolia NT,
Atkins JF, Baranov PV. Observation of dually decoded
regions of the human genome using ribosome profiling
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Hsieh AC, Liu Y, Edlind MP, Ingolia NT, Janes MR,
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Takacs JE, Neary TB, Ingolia NT, Saini AK,
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Identification of compounds that decrease the fidelity of
start codon recognition by the eukaryotic translational
machinery. RNA 17: 439 (2011).
Guo H, Ingolia NT, Weissman JS, Bartel DP.
Mammalian microRNAs predominantly act to decrease target
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Gracheva EO*, Ingolia
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Hollopeter G, Chesler AT, Sánchez EE, Perez JC,
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Ingolia NT, Ghaemmaghami S, Newman
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translation with nucleotide resolution using ribosome
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Ingolia NT. Topology and robustness
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Ingolia NT. Many Paths to the Same End: Histone
Transcripts Recruit Canonical Initiation Factors through
Unconventional Interactions. Mol Cell 41: 133 (2011).
Fordyce P, Ingolia N. Integrating systems biology
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